MDMC

Overview

  • 1. Introduction
  • 2. Installation
  • 3. Simulations
  • 4. Parameter Refinement
  • 5. Contributing to MDMC

Tutorials

  • Building an MDMC Universe
  • Reading atoms from configuration files
  • Units in MDMC
  • Applying a ForceField
  • Solvating an MDMC Universe
  • Molecular Visualization
  • Running a Simulation in MDMC
  • Creating an Observable from a Simulation
  • Selecting Fitting Parameters
  • Running a Refinement
  • Argon A-to-Z

Developer Documentation

  • Overview
  • Coding Standards
  • Documentation Standards
  • Units
  • Testing
  • MDMC Software Management
  • Containers
  • Debugging inside Containers
  • Recipes for ‘simple’ additions
  • Known bugs and unimplemented features

Modules

  • common
  • control
  • gui
  • MD
    • ase
    • container
    • engine_facades
    • force_fields
      • ff
      • force_field_factory
      • OPLSAA
      • spc
      • SPCE
    • interaction_functions
    • parameters
    • simulation
    • solvents
  • readers
  • refinement
  • trajectory_analysis
MDMC
  • MD
  • force_fields
  • View page source

force_fields

  • ff
  • force_field_factory
  • OPLSAA
  • spc
  • SPCE
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