MDMC
Overview
1. Introduction
2. Installation
3. Simulations
4. Parameter Refinement
5. Contributing to MDMC
Tutorials
Building an MDMC Universe
Reading atoms from configuration files
Units in MDMC
Applying a
ForceField
Solvating an MDMC Universe
Molecular Visualization
Running a Simulation in MDMC
Creating an Observable from a Simulation
Selecting Fitting Parameters
Running a Refinement
Argon A-to-Z
Developer Documentation
Overview
Coding Standards
Documentation Standards
Units
Testing
MDMC Software Management
Containers
Debugging inside Containers
Recipes for ‘simple’ additions
Known bugs and unimplemented features
Modules
common
control
gui
MD
ase
container
engine_facades
facade_factory
facade
lammps_engine
force_fields
interaction_functions
parameters
simulation
solvents
readers
refinement
trajectory_analysis
MDMC
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MD
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engine_facades
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engine_facades
facade_factory
facade
lammps_engine